Resources

LIQUORICE

Detection of epigenetic signatures in liquid biopsies based on whole-genome sequencing data

scifi-RNA-seq

Ultra-high throughput single-cell RNA sequencing

Chromatin profiles of CLL

Chromatin accessibility maps of chronic lymphocytic leukemia

CROP-seq

CRISPR screening with single-cell RNA-seq readout

DNA methylation assays

Benchmarking of DNA methylation assays for biomarkers and clinical application

ChIPmentation

Low-input and high-throughput chromatin mapping

Knowledge-primed neural networks

Interpretable deep learning

Single-cell atlas of LCH

Single-cell atlas of Langerhans cell histiocytosis

DNA methylation heterogeneity in glioblastoma

Heterogeneous DNA methylation landscape of glioblastoma disease progression

DNA methylation signatures in Ewing sarcoma

A comprehensive study of epigenetic heterogeneity in Ewing sarcoma

LOLA

Region-seq enrichment analysis

µWGBS & scWGBS

Low-input and single-cell DNA methylation profiling

Immune regulation in structural cells

Multi-omics atlas of the epigenetic and transcriptional networks that regulate structural cells in the mouse

RnBeads

DNA methylation analysis

VCF.filter

Interactive filtering of genetic variants

DNA methylation in human hematopoietic development

DNA methylation dynamics of human hematopoietic stem cell differentiation

RefFreeDMA

Reference-free analysis of DNA methylation

BiQ Analyzer

Bisulfite sequencing analysis